1) Two, the Hornady and the 21st Century
2) again yes. .001 - .002 on my bolt gun cases, .001 - .005 on my semi auto cases depending on which gage I use. That is why I think the semi autos, .308, 6.5 Grendel, 6 ARC, and 223, bend or just damage the rims and case bases. The Hornady shows more runout than the 21st Century with those. The Hornady of course indexes off the case rim/base The 21st Century off the case body. On my bolt rifle cases both tools give the me same numbers.
Now that I have developed a system both just sit on the shelf most of the time. I will do random checks now and again but I think my runout results are about as good as possible, at least with my bolt rifle cases.
3) I first went from non bushing to Redding S bushing dies, when that did not cure it I switched to body dies followed up by Lee neck sizing dies for the cartridges where possible. That was an improvement but I still wanted better. I ended up with a 3 Step system. Depriming with a universal, then sizing using either FL non bushing or a bushing die with the expander ball removed, and then I expand the neck using an expander mandrel for the final step. Three operations instead of one but that is what has given me the best results. I have also played with different lubes but that did not seem to affect my results and now I use either lanolin homemade on large batches or Imperial if less than 25 or so cases
Edit - I also played with putting the O rings under the dies and removing the spring clip from the ram's shell holder slot and using an O Ring to hold them in place instead