There is an issue here that I do not believe has been fully articulated but some have touched on it with their remedies. The issue is how far down the case the chamber makes contact on cases, vs. haw far down the case the die does. If you look at the bottom of a typical sizing die, you will see a rather generous chamfer in which the die cannot size the case Add to that the thickness of the shell holder above where the head of the case sits, and you have sort of an untouchable zone. If this zone is longer than the distance from the bolt face to where chamber starts making contact with fired brass (Chambers typically have a small chamfer, and then there is the "gap space" and depth of the bolt face.) You have the potential for clickers. The typical solution for this has been to size the part of the case just above this zone smaller with a small base die, that has the same reach problem but which pulls the unsized band down with the part next to it that is sized. IMO a better solution would be to specify a custom die so that it has almost no chamfer depth, and so that the top of the shell holder has to be cut down in order to bump the shoulder of a case. The combination of these two measures with proper consideration of the base diameter of the unfired case in chamber design should prevent click problems. This is not just speculation. I have proof that it works.
I have a Harrell Vari-Base die that is designed to take threaded inserts at the base of the die, they were available in .001 increments. Some time back a case that had been used for testing pressures of loads with different powders for my 6PPC developed a click. This was after many firings. That particular die is a bit long from shoulder to base so that I ran into a problem bumping shoulders of work hardened cases. To solve this problem a friend used his lathe to face off one of my shell holders about .013. As a result, with the die properly set, there is a slight gap between the bottom of the die and the shell holder. I should also mention that the base inserts for the die have almost no chamfer. The day that the click appeared I was, as is my usual practice, loading at the range and as I sat there thinking about my options for solving the problem, given that I do not own a small base die, It occurred to me that slightly unscrewing the base bushing so that it just touched the shortened shell holder, at full stroke, while sizing, might solve the problem. It did, completely. My next firing of the case with with the same charge that caused the click and when I extracted the case there was not click. Subsiquent firings with that die setup did not click. At the time that I unscrewed the insert a little, I knew that it was possible that the force of sizing might spoil the fine threads, but I have always been willing to take a little risk that I can afford to learn something. Luckily there was no problem.
The fellows that have cut the shoulders out of dies and cut off a bit of their basses have essentially done what I did, and IMO that is the best way to deal with the problem for an existing chamber. It removes the over deep chamfer, has the base opeing smaller, and decouples bump from body diameter sizing.
There is more that can be said about clickers relating to chamber design, but I will save that story for another time.