Maybe your old LEE seater had a different shaped seating stem? Or maybe you're now using a different shaped bullet? It's possible that the tip of some of your bullets are making contact w/ the seating stem causing the variation. To chk. this possibility 1st sort bullets by ogive length w/ comparator then chk same bullets using seating stem removed from die as a comparator. I've found this problem in the past & simply used a small drill to deepen the seater stem. This insured the stem touched the ogive NOT the bullet tip.....Bullets w/ very sharp polycarbonate tips often touch only the tip of the bullet in the seating stem. Other super pointy bullets will do the same. Should this be the problem, the "fix" will also improve concentricity (bullet run-out) in loaded rounds. Just a thought.