I think what MikeCR may mean is that you look at a given bullet's BC and factor in how fast you can shoot it, then the ballistics programs can predict how far it will drift in a crosswind.,You do need to confirm the BC with "real world" testing at the range of course.)
You can have a 6mm bullet/speed combo that outperforms a 30 Cal set-up, or vice-versa.
Now, add into the equation the observation by many long range shooters that, when conditions get really bad, the big heavy bullets may seem to fly more consistently than the 6mms. Why, nobody is quite sure. It may have to do with performance in fishtailing winds. Mind you, this is part of the "voodoo" of the long-range game. BC and velocity should "tell all". But many folks think there is more involved and the big, heavy bullets will do better in the wind than a 6mm set-up even if the ballistics and crosswind drift appear equal on paper.
On the flip side, you have to look at vertical consistency. In calm conditions, Jason Baney has achieved tight verticals with his BR that beat just about anything he's seen with bigger bullets. The ballistics tables can predict vertical drop caused by drag. They don't tell you,assuming ES/SD are equivalent) which bullet/velocity combo will hold tighter vertical on the target.
There are a lot of factors to consider. That's why you see a wide range of cartridges being used successfully at 1000, from a standard 6BR to the 30-.338 Lapua Magnum that recently sent a world record in Ohio.
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Regarding the 6PPC. That cartridge is normally shot with short, low-BC flatbase 60-68gr match bullets. These have exceptional accuracy, but they WILL move more in a given crosswind than a longer boat-tail design, when pushed at equal velocities. But again, you have to add in the inherent accuracy factor. At 100/200 yards if the shorter bullet is much more likely to group in the "zeros", so far it remains the first choice in BR at those distances. The general consenses is that the better performance in the wind you may gain with the longer, higher-BC bullet, is offset by the accuracy you lose, at least out to 100/200.