One thing I would like to know about the runout could powder build up in the case neck be causing the runout. Then that would bring up the question of brushing the inside of the neck or not. Some say leave the powder there for bullet lube some say brush it clean. I sonic clean then resize and tumble to polish my brass. I also use the Wilson micrometer seater die.
The inside of my necks are clean, no carbon at all.