I have the Stoney Point tool, and the brass tool that Lynwood Harrell furnishes with his dies. The latter is somewhat caliber specific, being limited to the PPC and BR cases, 6mm and less, after fire forming,if made from .220 Russian brass), with the standard shoulder angle. The Stoney Point tool should work with any shoulder angle.
The key to getting good readings with either is to apply light pressure to the case being measured with the adjustment wheel of the caliper while shifting the base of the case around on the movable jaw of the caliper with the thumb and forefinger of your other hand. With a little practice, you should get the feel of it. Look for the smallest reading that you can get, without deflecting the jaws, for each case.
If cases are not from the same lot, fired and sized the same number of times, they will likely have different amounts of spring back, which will result in variations bump that a given die setting will produce. Uniform lube application and having a shell holder that gives a positive stop against the die will also help.
If one is talking about getting consistent repeated measurements of the same case, the "problem" is a mystery to me, since I have an easy time achieving consistent readings with either tool. If, on the other hand, the problem is getting consistent bump, from case too case, the factors mentioned above may dictate a slightly greater average bump, so that the hardest cases' shoulders are bumped.
In short range,1-200 yd.)Benchrest competition, where the same small batch of cases are usually used all weekend, it is common to have to readjust FL dies as brass work hardens from repeated sizings and firings. Because of this, I measure the bump of the first case sized, when reloading a particular set of cases, each time that I load them, to make sure that my die setting is producing the bump that I want. This measurement is done with a barrel stub that has the front of the chamber reamed in one end. I only use it with brass from chambers reamed with my reamer, since I have learned that chambers of the same nominal neck diameter,.262) man be slightly larger than mine, which can cause the stub to take a false reading off of the base of the neck,where the bushing doesn't size due to its chamfer), rather than the shoulder.