On a BDL it is easy to get the mag box in a bind when installing the bottom metal. There is a lip in the bottom metal that the bottom edge of the box has to fit inside of, and because the back of the box is split, it requires some manipulation during assembly, before any screws are tightened, to get it in place. Without seeing your rifle, it is hard to determine if this is the problem. Generally, with the floor plate open, I want to be able to feel some shifting of the mag. box when I reach inside press my fingers against the inside of the box and try to move it up and down. I don't need much but I do not want it jammed between the action and the floor plate. I would make sure that I had it inside the recess in the floor plate before shortening the box. If this is not right, the best bedding job in the world will not overcome it. Also, bedding the floor plate against the bottom of the pillars is a good idea. With the barrel floated, and the rifle horizontal, the weight of the barrel is trying to pull the back of the action up, and the only thing that keeps it securely against the action bedding is the back of the bottom metal/trigger guard which is pulled up into the stock by the weight of the barrel. This makes the fit at this point of concentrated force an important contributor to the quality of the total bedding system.