So...how would adding a Brake create a "bad spot" in the chamber?
A brake, any brake, whether installed or removed, left alone or adjusted/tampered with
could not cause the problem you were describing with the bolt sticking. Even if the brake was somehow miss-installed, it's at the muzzle and I just don't see how it,
by and of itself, could change or cause a problem for the bolt/receiver. There is a remote possibility that the barrel was removed, a brass center turned to carefully fit in the chamber {looks like a solid brass case with no bullet} was used to center the barrel. This prevents having to chuck it up on the threads or chamber area and risk marking up the barrel. This method is old school but it works and is especially useful for cutting muzzle threads because the barrel is held in the lathe centered on the chamber on one end and a live center at the muzzle. This ensures {if it's done right} the threads are on the same axis as the bore. Anytime you put something in the chamber you risk some type of damage. Not saying this happened, but it could and we don't know.
You had to have some kind of issue with either the chamber and/or the receiver/bolt to cause the bolt sticking or hanging problem you described. If all was well, simply turning the barrel a little more would not change this. You are saying you got the rifle back, it works okay now and the barrel appears "turned" from where you last remembered it to be. I routinely remove and reinstall barrels all the time and they go right back where they belong unless something is intentionally changed. If I have to R&R a barrel I put a witness mark on it so I am certain it goes back in the same place. The only time the barrel does not go back to it's original location is when the shoulder is cut back to change it. If the shoulder was cut back the barrel will have to be rechambered so the headspace is correct.
What we don't know is what else has happened to this rifle. There had to be something, why else would the barrel now be located in a different place. My suggestion of the receiver being twisted could still stand. You took it back and maybe he fixed it. That's a big if because, while it can be done, most guys that would twist it in the first place
probably wouldn't know how to "untwist" it...if they knew about that I would think
they would have never let it twist to start with. But, stranger things have happened.
I don't know if it's worth worrying about at this point...you got it back and am I correct to understand it appears to be fixed?? If so then good. It sounds like you are not going to get a straight answer from the smith...something went on, but we don't know what. Whether or not you choose to recommend this smith again or use his services again is up to you. I mean, it works so okay, but it's kind of an insult to be told something that you know is not true. Something happened.
If you saved any of the cases that were fired in this thing when it was sticking you should be able to see the galled spot if there even is one and you haven't resized the cases. You have to understand, all this is guessing at something described, not seen and based on my experience with other rifles.