From your notes...
36.0 = 2,810
36.2 = 2,692
36.4 = 2,589
36.6 = 2,574
36.8 = 2,753
37.0 = 2,664
37.2 = 2,718
37.4 = 2,831
37.6 = 2,693
37.8 = 2,757
38.0 = 2,769
38.2 = 2,819
38.4 = 2,996
38.6 = 2,843
38.8 = 2,887
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That's quite the up and down shift in velocities from just 0.2 gr increments.
I'm thinking...
Most likely the problem with the velocity discrepancy is the charge weights are way to low for H-4350 with 90 gr bullet in the 243win.
Hodgdon's H-4350 data STARTS at 42 gr and goes up to 44.5
Speer data with 90 gr starts at 40 and goes to 44 gr
Nosler data for 85/90 gr starts at 36 and goes up to 40
If all else is good...
Either the powder scale is off
or the brass is not of the same brand
or some of the brass has been reloaded more times the others.
OR the Chronograph is too close to the muzzle... that's if it's a chrono that uses the light screens. It should be at least 10 feet away from the muzzle.